rs32846595 SNP Detail

Summary

• ID
  rs32846595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152222700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGAGAG AAGGAAAGAG
  AAAGAGAGGA AGAGAGAGAA AGAGAAAGAG AAGGAAAGAG AAAGAGAGGA AGAGAAAGAG
  AGAAAGAAAG AGAGAGGAGG TTATACCTGT CTGTGAAATG AGACCACGAC CATACCCTAC
  AAGAGGTTCT GTAAGATTTA AGTCAGATAA TACATGTGGG TGGGTGAAAG ATCAACTTGG
  Y
  TGACTCCAGT GATCTGTGTC TCTTGGCTGC TGCCTGTCCT CATGCGCGCC CCCCCCCCCC
  CTCAGGCAAG AGGCATCATA TCTCTGAACT TCACCTTTCT CCTTGGTACA AGGGCAAGAC
  ACTGATTCTT GGGGTTAAAT GGTGAGAAGG GTGAGAGACT CCACACCAGC CACTTGTGGG
  TCATACCAGG GTTTGCACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46736718	NES10987397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32846595					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736718	NES10987397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152222700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15394	CpG island 15394	73 bp proximal
Espn	espin	Intron
Gm69804	predicted gene, 69804	1437 bp downstream
Rr398895	regulatory region 398895	338 bp upstream
Rr605755	regulatory region 605755	1293 bp distal
Rr605756	regulatory region 605756	1530 bp distal
Rr605757	regulatory region 605757	397 bp proximal
Tssr44822	transcription start site region 44822	531 bp downstream