rs32845972 SNP Detail

Summary

• ID
  rs32845972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152221915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCCTGGA GATAGCATCC
  CTCTGAGAGG GGCTGTGAGA CCCATCTTTT TCCTTTTCTA TTACTGCCTC AAGGTGAGCG
  TTGAATTATC TGGGACAGGG CCCTGGACTT GGGGACACAT TCACCGGAGC CTGAGTCTTA
  CTGGGTCATC TTGTGACTTT GTAAAACATA TAGCAAGATA ATTTACAAGC ATATATCATG
  Y
  TTTAGTTTTG AGGCAACTAC AAAGTGAGCA GATGTGTACC AGTCAAGACA GGTGGCTCCT
  GTCGGGTGCT GTGCTGCATG GCTGTAATCC TAGCTACTTG CAGGAGGAGA GACACAAGTT
  CGAGGACAGT CTGGGCAACT TAGCAAGTTC TTATCTAAAA GTCAATTTAA AAGGCAAATG
  GGGGGGGGCT GGTGAGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736715	NES10987479	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32845972					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736715	NES10987479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152221915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15394	CpG island 15394	858 bp proximal
Espn	espin	Intron
Gm69804	predicted gene, 69804	652 bp downstream
Rr398895	regulatory region 398895	1123 bp upstream
Rr605754	regulatory region 605754	1321 bp distal
Rr605755	regulatory region 605755	508 bp distal
Rr605756	regulatory region 605756	745 bp distal
Rr605757	regulatory region 605757	1182 bp proximal
Tssr44822	transcription start site region 44822	1316 bp downstream