rs32845969 SNP Detail

Summary

• ID
  rs32845969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152221854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCATCTTT TTCCTTTTCT ATTACTGCCT CAAGGTGAGC
  GTTGAATTAT CTGGGACAGG GCCCTGGACT TGGGGACACA TTCACCGGAG CCTGAGTCTT
  R
  CTGGGTCATC TTGTGACTTT GTAAAACATA TAGCAAGATA ATTTACAAGC ATATATCATG
  TTTTAGTTTT GAGGCAACTA CAAAGTGAGC AGATGTGTAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736712	NES10987478	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32845969					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736712	NES10987478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152221854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15394	CpG island 15394	919 bp proximal
Espn	espin	Intron
Gm69804	predicted gene, 69804	591 bp downstream
Rr398895	regulatory region 398895	1184 bp upstream
Rr605754	regulatory region 605754	1260 bp distal
Rr605755	regulatory region 605755	447 bp distal
Rr605756	regulatory region 605756	684 bp distal
Rr605757	regulatory region 605757	1243 bp proximal
Tssr44822	transcription start site region 44822	1377 bp downstream