rs32845966 SNP Detail

Summary

• ID
  rs32845966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152221834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTACACAC TAGCAAGCAG
  AGCAAGCCTA TTGGCCTTCT TTCCTCCGGC TTCATCTGGA AGACTTCCTC ATGGCTGGGC
  TGGGCCCTGG AGATAGCATC CCTCTGAGAG GGGCTGTGAG ACCCATCTTT TTCCTTTTCT
  ATTACTGCCT CAAGGTGAGC GTTGAATTAT CTGGGACAGG GCCCTGGACT TGGGGACACA
  Y
  TCACCGGAGC CTGAGTCTTA CTGGGTCATC TTGTGACTTT GTAAAACATA TAGCAAGATA
  ATTTACAAGC ATATATCATG TTTTAGTTTT GAGGCAACTA CAAAGTGAGC AGATGTGTAC
  CAGTCAAGAC AGGTGGCTCC TGTCGGGTGC TGTGCTGCAT GGCTGTAATC CTAGCTACTT
  GCAGGAGGAG AGACACAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736709	NES10987477	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32845966					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736709	NES10987477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152221834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15394	CpG island 15394	939 bp proximal
Espn	espin	Intron
Gm69804	predicted gene, 69804	571 bp downstream
Rr398895	regulatory region 398895	1204 bp upstream
Rr605754	regulatory region 605754	1240 bp distal
Rr605755	regulatory region 605755	427 bp distal
Rr605756	regulatory region 605756	664 bp distal
Rr605757	regulatory region 605757	1263 bp proximal
Tssr44822	transcription start site region 44822	1397 bp downstream