rs32845290 SNP Detail

Summary

• ID
  rs32845290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152221723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCAGGAT CACCTACACA CTAGCAAGCA GAGCAAGCCT
  ATTGGCCTTC TTTCCTCCGG CTTCATCTGG AAGACTTCCT CATGGCTGGG CTGGGCCCTG
  R
  AGATAGCATC CCTCTGAGAG GGGCTGTGAG ACCCATCTTT TTCCTTTTCT ATTACTGCCT
  CAAGGTGAGC GTTGAATTAT CTGGGACAGG GCCCTGGACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736703	NES10987475	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32845290					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736703	NES10987475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152221723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15394	CpG island 15394	1050 bp proximal
Espn	espin	Intron
Gm69804	predicted gene, 69804	460 bp downstream
Rr398895	regulatory region 398895	1315 bp upstream
Rr605754	regulatory region 605754	1129 bp distal
Rr605755	regulatory region 605755	316 bp distal
Rr605756	regulatory region 605756	553 bp distal
Rr605757	regulatory region 605757	1374 bp proximal
Tssr44822	transcription start site region 44822	1508 bp downstream