rs32844239 SNP Detail

Summary

• ID
  rs32844239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86805845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCAGTGC TGGGCATGGA
  ACCTGGGGCC CATTACTGAG CTATACCCAA CTTTAATGAT GTTGAAAACC ATGTATATTT
  GGTTTTTCTC CCTGTACCAA AATATACCCA AGAACAACGT AAAGGAATGC AGGTTGGTTT
  TGCTCATGAT TTCGGGGGTC TCAGTGAATG ATCGGCTGGC CTCGCTGTAC TGGACCTGAG
  M
  CAAGACAGAT GGCTGAGGCA CACAGTAGAG AAGACTGTTC ACCTCTGCCA ACAAAAGGTG
  ACAGAGAGAT AAGAGTGAGA GCAGGACATG ACCTCACAGA AATGTGCCCA AGAAATTATT
  GCTTGTGCTA GCTTCCAGCA CCTCGAAGCA GCCAATCAAA TTGTGGGCCC ATCAACCAAT
  AAATCCACTG ATGAGATAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736927	NES10749879	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32844239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736927	NES10749879	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86805845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579411	regulatory region 579411			531 bp distal
Tssr33911	transcription start site region 33911			895 bp downstream