rs32843385 SNP Detail

Summary

• ID
  rs32843385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152220211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTCAAA GGTCATTGGC
  TGGACCGACA TGGTGGTGTT GGGCGAGGAC ATACCCGAGT CCAGCTGCTT TGCCTCCAGG
  TCCATGGATT GATCCCGGGA CAAGACTCGG TGTTCCAAGC TCTGAGGGAA AAGGAGGGAA
  GTTTTGGGCT CCAGCGTCCT GTGGGGATAA CTTCCAGGCC AGGCCTATCC AGACTCCTAT
  Y
  CAGAGTCCTC CCTGAGCAAC CAGCTGAGGC ACTTCCTGAC TTCTGCACCA TTTCCACTTC
  TTCCTAGGTC AGGAGTCAAG AGCAGACACT TCCACTTGCA CTTCAGGCCT CAGAGAAATG
  CCCAGCTGGC TCTCCCCAGG CTCAAGACAC TTGTGAAGGA GGGTCTGGCC TGCACCCCAA
  AGGGATGCAG CCCTGCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736667	NES10987549	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32843385					SNP	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736667	NES10987549	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152220211 () rs orientation: forward

Symbol	Name	Function Class
Espn	espin	Intron
Gm69804	predicted gene, 69804	within coordinates
Rr605754	regulatory region 605754	362 bp proximal
Rr605755	regulatory region 605755	720 bp proximal
Rr605756	regulatory region 605756	938 bp proximal