rs32842594 SNP Detail

Summary

• ID
  rs32842594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152219740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGTGTC TGTGTTGGAC
  TGAGTGACTT TGGGTGTGGG TGGCCATGTT TGTAATAGGG AAATGGTGGC CTTCTGTTTG
  TGTAATATAG GTATAAGTGT GCATATTTTT GGCATAAGTG TGTACGTGTG CTTGTGCATG
  CTTACGTGTA TACTCTGCAC ACCTGTCCAC ATGTGCACCT TTGAGTTTGG TAGCTTAGCA
  Y
  CGAGATCACC GAGTCATGTG TTGGACACAT GCAGGCTTTG TGGCAGGGTC TTATTGGGAT
  GGACAAGTTC AAGTGCATCC CCTCTCCATG TTAAGACATT GACTGATACA GACAGACAGA
  CAGATGGACG GAATGGCCCT GGCTTTGACT CAGTTCCCCA CACTCCTCCT CCTCCTTCCA
  TCCACTCACC TCGATTCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46736655	NES10987541	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32842594					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46736655	NES10987541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152219740 () rs orientation: forward

Symbol	Name	Function Class
Espn	espin	Intron
Gm69804	predicted gene, 69804	within coordinates
Rr605754	regulatory region 605754	833 bp proximal
Rr605755	regulatory region 605755	1191 bp proximal
Rr605756	regulatory region 605756	1409 bp proximal