rs32842059 SNP Detail

Summary

• ID
  rs32842059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86715903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCAGCG ATGAGAATTT
  GTCTCACTCG ACAAGAGCAG TCACCACCAC TAGAGTAAAA CAGGCTTATT TTAAAACTAA
  CTAGATTATG GTTTCCAGCC TCAATGCCAT ATTCTGCCTG CCCATTTTCT GCAGTGTTAA
  GAGTCTATAA AGTTATTTTC AGGTAAGTTT TGGATGCTAA TGAATAAGTG TGACGCAGTC
  R
  GTGTCAGCAG CATAACAAAA GCTCTTTGTA TGGAGTTAAA ATATGCTGTC TACGCTATCC
  AGAGACCCTT CCCCAAATTA TTATTATTTT CAACAAAAGG CACTCAAAAC ATCTGTGGAC
  CCACTGTGGG ACCCCTCTTG GCAGGGTTAG AAAGCTACCA GCGGTGTCAA GTTCAAACAT
  CAAGCAAATA CGGGGACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46735886	NES10753127	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32842059					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735886	NES10753127	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86715903 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579387	regulatory region 579387			180 bp distal
Rr579388	regulatory region 579388			327 bp distal
Rr579389	regulatory region 579389			654 bp proximal