rs32840616 SNP Detail

Summary

• ID
  rs32840616
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152082875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAGGGC TACACAGGGA
  AACCCTGTCT CAAAAAAGTG CCACACTATA CTAGCATGAT AATGCATACC TGTAAGCCCA
  GAGTCTGGGA GATAGAGGGG AGAGAATCAG GACTACTGGT CAACCTTGGT TCCCTAAGAA
  GCCTGAGGCC AGCCTGGTTG TCCCAAGACC CCATCTCAAG ATGCAGACAC AAACCAAGAA
  K
  TAAATGACCA CACCTGATCT TTATTCCTTG TGCTAAAAAT TTCACAGTAA ACAGCCAAGT
  CGTCCTCACA CTAAGAAACT GGCGGAAGGA CTGGGCTCAG GGGTTGAGAG TAAGCAGTAA
  GTTGCAGAGG ACTTGAGCTC AGACAACCCA CACCGAGTGT AACTCCAGCT GTAGGGAACC
  TGATGCCTCC ACTTTCCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss46735668	NES10993052	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs32840616					SNP	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735668	NES10993052	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152082875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15382	CpG island 15382	1259 bp distal
Gm69399	predicted gene, 69399	899 bp downstream
Rr398892	regulatory region 398892	1929 bp downstream
Rr605704	regulatory region 605704	1670 bp distal
Rr605705	regulatory region 605705	1675 bp distal