rs32840474 SNP Detail

Summary

• ID
  rs32840474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162898018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCACATG GTGTGACTCC
  CTGTACCCCA GTGGCCCACT TCCCTCTTGG CCTCTGACTC ACCTTTCCCT GGAGCATAGC
  CCAGAACGTA CAAGGGCAAG AGAAAGGGTA TGTGTATATA CAAAAGTGTG ACTTTTCTTT
  AAACAGCACA CTGGCCTCTG CTTTTCATGC TACGGTTCCT AGGGAGGTTA GGGTGTAAAA
  W
  TGTGGAGCTT GGTGTGACAT AATCGTTGTC GGCCTCACTT TTCCCGTCTG TTAAATGGAG
  CCCTTGAGAA TGCGCAAGAA GGTGTGTGAC TGATGGATAC TCCCATCTGT TTAATAGTGT
  GACCATGCCG GGTAGCAGCA ACACATGTCT TTAATCACAG CACTCAGGCA GGTGAATCTC
  TTCAGTATAC AGGACAGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45201723	mCV22752343	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32840474					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162898018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	694 bp distal
Gm75254	predicted gene, 75254	1684 bp upstream
Mybl2	myeloblastosis oncogene-like 2	Intron
Rr397459	regulatory region 397459	1438 bp downstream
Rr569271	regulatory region 569271	1695 bp distal
Rr569272	regulatory region 569272	1401 bp distal
Rr569273	regulatory region 569273	within coordinates
Rr569274	regulatory region 569274	606 bp proximal
Tssr21431	transcription start site region 21431	1515 bp downstream
Tssr21432	transcription start site region 21432	1449 bp downstream
Tssr21433	transcription start site region 21433	1421 bp downstream
Tssr21434	transcription start site region 21434	1405 bp downstream
Tssr27277	transcription start site region 27277	1678 bp upstream
Tssr27278	transcription start site region 27278	1644 bp upstream