rs32839706 SNP Detail

Summary

• ID
  rs32839706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152064925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACGGCTA GACGTGGCTG
  AGAGCATGTT GCTTTTGCAG AAAACACAGA TTTAGTTCCC AGCGCTAAAT GGTAGCTCAC
  AACCATCTGT AACGTGTTTC TGGATCTGAC GCCATCATCT GACCACAGCA TGAAGCATGC
  GTGTGGTTTG ATCAGACAGA ACATCATACA CAAAAAACTT TAAAAGGAGG TTGGGAGATA
  Y
  GGCGCCTGGC TGCAGCTGCG AGTGGCTATG TAGAAGTGTT TTTCCTGGGA ACAGAAGCAG
  TTGCTTAAAG TGGAGTGTGG TGGGACTTGG GGCATGGTCC AGTGATCTCT GAGCTCCAGG
  CCAGCCAGGG CTAAAACTTG AGCAGCAGCA GCAGGTGCCC CTAGCCAGGC CAGGGGATGC
  AGAAGGGAGC TTGCTTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46735656	NES10985404	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32839706					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735656	NES10985404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152064925 () rs orientation: forward

Symbol	Name	Function Class
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11	Intron
Rr605687	regulatory region 605687	1788 bp distal
Rr605688	regulatory region 605688	1601 bp distal
Rr605689	regulatory region 605689	74 bp distal
Rr605690	regulatory region 605690	277 bp proximal
Rr605691	regulatory region 605691	365 bp proximal
Rr605692	regulatory region 605692	798 bp proximal
Rr605693	regulatory region 605693	1084 bp proximal