rs32839147 SNP Detail

Summary

• ID
  rs32839147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152064159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAAGGTG AAGGTGATTG
  ACGTGACAGT GCCCCTGCAG TGCCTGGTGA AGGACTCCAA GCTCATCCTC ACAGAGGCCT
  CCAAGGTACA GCACCAGGCC ACCTCGGCCA CCTGCTCCCA GGACCCAGAT CCATGTGACA
  AGGACAGTCA GGCCTCAGTG CCAGCAAAGT CTTCCTGGTG CTTGTATGTC CTCTGTCTGC
  Y
  GGGTTCCAGA AAGAGGCTGT GGGCTCAGAA GTCATCTGTG GCTGTGGCCG TGTCGGGCAG
  GCTTCAGGCT GGACTGAGAA GGGCTCAAGG ACCAGTCTGG CACCACCCAA GTAAACTCTA
  AATTCTCATT CCTTCATCAG GCTCCAGACT GTGTGCCTGA TAGAGGGGAG CGGTGCGGGG
  CTCAGGGCTG ACCTGACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46735647	NES10985401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32839147					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735647	NES10985401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152064159 () rs orientation: forward

Symbol	Name	Function Class
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11	Intron
Rr605686	regulatory region 605686	1767 bp distal
Rr605687	regulatory region 605687	1022 bp distal
Rr605688	regulatory region 605688	835 bp distal
Rr605689	regulatory region 605689	671 bp proximal
Rr605690	regulatory region 605690	1043 bp proximal
Rr605691	regulatory region 605691	1131 bp proximal
Rr605692	regulatory region 605692	1564 bp proximal
Rr605693	regulatory region 605693	1850 bp proximal