rs32839117 SNP Detail

Summary

• ID
  rs32839117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88725728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGGTAGG AGGTGGACCT GAAATATTAA ACCCTCTGGC
  TCTATAGGCC TCAGGTTGGG AGAGAGGAAT TTCCCATCTC ATGTTTCATC AAGATGGAAG
  Y
  CTTTTGTCCT AGGTTCCATA CAAGCTGCTA ACTATAGTGT TTGTTTCAAA AGTTCCTTCT
  CTCTAAAAGT CCCTTCTTTT TTACGTATTA TCAGCAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45701793	mCV25216806	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss146940332	ENSMUSSNP3668083	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321203824	CHEV_4_88453395	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32839117					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88725728 () rs orientation: forward

Symbol	Name	Function Class
Gm13288	predicted gene 13288	mRNA-UTR
Rr595116	regulatory region 595116	1950 bp distal
Rr595117	regulatory region 595117	1987 bp distal
Rr595118	regulatory region 595118	1474 bp distal
Rr595119	regulatory region 595119	1328 bp distal
Rr595120	regulatory region 595120	986 bp distal