rs32838439 SNP Detail

Summary

• ID
  rs32838439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152062553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGTGG GATCCAATGA
  AGACGCCAGG CTGCACTCTG GGCTCTGTCC AGCAGGGGGC TCTGTGCTCA CTGTAGAGTG
  ATTTGTGGTT GCTTCTCTGA AAGGGAACTG GAAAAGCAGA GAGAGAACAC AGCCAGCGAC
  ATCCTGCAGA AGAAGCAAGA GGCAGAGGCC GCTGTGAGTG TCCCACTGCT CATATGCAGG
  R
  CACAGGGCAA ACCTCCACAC AGGGCCCATC CCACTGAAGC TGGGGCTGTG ACTCCAGACA
  GCCCAGGGGC TCTGCTTCAC CGACAACCTC GTTCCCTCCT GAACTGCTGT GTCTGGAGTC
  TGCAGTCTGT GCCCTGAGTC CCAGCACGGC TCTGTAGCGT GGCACACACC GCCCTGCTCT
  CCTCCTTTTT GTGAGAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46735638	NES10985474	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32838439					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735638	NES10985474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152062553 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11			Coding-NonSynonymous
				Intron
Rr605686	regulatory region 605686			161 bp distal
Rr605687	regulatory region 605687			563 bp proximal
Rr605688	regulatory region 605688			750 bp proximal