rs32838436 SNP Detail

Summary

• ID
  rs32838436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152062434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT CTGTGCTCAC TGTAGAGTGA
  Y
  TTGTGGTTGC TTCTCTGAAA GGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45723373	mCV24830119	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss46735635	NES10985473	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	T		C	T	T	T		T	C		C
ss148078622	ENSMUSSNP4291169	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss321433789	CHEV_4_151352086	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32838436					SNP	C	C	T	T	C	T	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735635	NES10985473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152062434 () rs orientation: forward

Symbol	Name	Function Class
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11	Intron
Rr605686	regulatory region 605686	42 bp distal
Rr605687	regulatory region 605687	682 bp proximal
Rr605688	regulatory region 605688	869 bp proximal