rs32836167 SNP Detail

Summary

• ID
  rs32836167
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135001498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACATAT ACGTGGCTCT
  CAGGTGATGG CTCAGGCAGG AGGGCTGAGA GTTTGAGGAC AGTCTGGGTA TATTGCAAGA
  CTACCTCAAA ATAATAATAA TAATAATAAT AATAATAATA ATAATAATGG CAGTCAAGAT
  GATTCAGCAG GTAAAAGCGT TTGCCTTGCA AGACTTCCAA CCTGGATGTG ATGTTGGGGC
  M
  ATCTAAAGGT AGAAGGAGAA AACCAACTCC AGAAAGCTTA CCTCTGACTT CTACAGAATG
  CCATCACACA CACACACACA CACACACACA CACACACCAG GGTTTGGGTT TTGGTCTGCC
  TGTTTTTTTT CTCCACCTCC CAAGTACTAG GGTCAAAGGT GTCCACCACT GCAACCAACA
  ATCACCGTAT TTTTTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45701190	mCV25366063	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss147543329	ENSMUSSNP2374703	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32836167					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135001498 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	1427 bp upstream
Cpgi15068	CpG island 15068	564 bp distal
Rr398589	regulatory region 398589	996 bp downstream
Rr601975	regulatory region 601975	1384 bp distal
Rr601978	regulatory region 601978	1717 bp distal
Rr601979	regulatory region 601979	1374 bp distal
Rr601980	regulatory region 601980	883 bp distal
Rr601981	regulatory region 601981	1058 bp distal
Rr601982	regulatory region 601982	357 bp proximal
Tssr43973	transcription start site region 43973	1470 bp upstream
Tssr43974	transcription start site region 43974	1440 bp upstream
Tssr43975	transcription start site region 43975	1414 bp upstream
Tssr43976	transcription start site region 43976	1395 bp upstream
Tssr43977	transcription start site region 43977	1368 bp upstream