rs32831577 SNP Detail

Summary

• ID
  rs32831577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119691536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGAAGTATT TGAATGATTG TCCATCTGTG GGAGGTGGAA AGGAAGCAGG AAACGCATGG
  GGTGTGGTCT TTGGTCTCTG TGATCAGGGA TAATGCAAAC AACGTGAAAT AATGCAGGCC
  TGGGGAGGAG ATGCTGACAC TTGGTGAACA CCTTCATCTA AGGGAACAAG ATGGAGAACA
  GTGTGCCCTG AGGTATGTTA CCTAGCACGC AGTCCTAGAA GCAAGGCGCC ATGGGAGTGT
  GAGCCATCAC TGTGCTGCTC TGCGGGGTCC TGGTTTCTCC CCCACCAGTG CCTCGGTTCC
  Y
  GATAAAGCAG GAGGGGGAGA GAATACTATG CATAGAGTAG TTAAGAAGGT TAAATGGCTT
  CATATCTATA CATTGCTTCG GGTAGTACCT GGCACTTCAA GACACATATA CATCCTTTGT
  TAAAGACACA AAGGAGCCTG GAGCCCTGGG AGGATACATA ATTGATGCAA AGGCTGCTGA
  ACTAGGCAGC TCTCAGGTAG AACCTGAACC TAGCATCCTG CTGATGTGTA GCCAGCTTTC
  CCAAACTTGG CACCTGTGGC ATTCTGAGCC ACACAGCGCC TTCATGTGGA CTGCTGTCCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45700909	mCV25416448	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32831577					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119691536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			within coordinates
Rr598660	regulatory region 598660			273 bp proximal