rs32827802 SNP Detail

Summary

• ID
  rs32827802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185417376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATCCTCC ATTTTACTAA TTGCAGGAAG AAGACTTTGA
  AAATCCACCA CGCTTTCCCT GACATGCAGT CCTACACCGA GCCCATGGAA AACTGAGGTC
  Y
  GGGCTGCGCC GACTGTGGCT TCCATTTGAA GTTTTCAGCT GTGCGATTGT GGGGGGCTGC
  TCTGGAAGCA TAGATCTTGT TTCCCTCCTA GGCACCAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46734730	NES10660965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C		T	C		C
ss146440100	ENSMUSSNP2717375	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
ss320178643	CHEV_1_187509058	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32827802					SNP	T	T	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46734730	NES10660965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185417376 () rs orientation: forward

Symbol	Name	Function Class
Rr425422	regulatory region 425422	360 bp distal
Rr425423	regulatory region 425423	172 bp distal