rs32827219 SNP Detail

Summary

• ID
  rs32827219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119450391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAGAGAAAA TGTGGGGATT CATTGTGAGA TTGGACTTGC TATATTGAAG CTTGCCCACA
  TGTATATACC AGAGATTTGT ACAGCAAACT GCTATTTGCA CTAAATCTCT AATTAGTTGT
  CATAAATGTT TTTAAATGGT TTAAATAGAA TAATGTGGCC ATAGGTACAC CTTTTATCTG
  GCTGAACGGC AGTGAAGAGT ACTTAGAAAT GTTTCTGAGT TTAGTGCTTA ATGGCTCCCC
  AACTTATTGT CTAAAGCTTA GTCCTTCAGG TTTTTGTTAT CTTCTCCTAT TCCTCCCCCC
  Y
  CCCTTTTTTT TTAATGAAAT AAAGTCTCAT TATACTGCCT GGGCTATCCT GGAAAACAGT
  ATATAGCTTT GAGTAGCCTG AAACTTATGC TGAGACTATA TATGGGCTTG TACCTCCACC
  GATGGCCTGA CTGTAATTGT TTATCAGACT ACACCTGTTG CCTCTGCATC TCAGCTGCTC
  AGATGAGCAC CCTGTCCTAC CTCAGTTAAG TAGTTTGGGG TTTGCTTCAT AGCCCCTGCT
  GTGTTCTTTA TTTCTAGCTC ACTTGGTATT TTATAAACTC TTTTCCCATT AGTCCACTGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45200037	mCV22554034	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32827219					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119450391 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			981 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			1441 bp upstream
Rr397233	regulatory region 397233			1154 bp downstream
Rr563550	regulatory region 563550			1602 bp distal
Rr563551	regulatory region 563551			1601 bp distal
Rr563552	regulatory region 563552			1183 bp distal
Rr563553	regulatory region 563553			52 bp proximal
Rr563554	regulatory region 563554			1020 bp proximal
Tssr19645	transcription start site region 19645			1173 bp downstream
Tssr25824	transcription start site region 25824			1400 bp upstream