rs32823436 SNP Detail

Summary

• ID
  rs32823436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAATTAA TTAAATGTTA
  GTTTTATACT CATGTTTAAT ATTTTTTAAT AATTGTAAGG TTGATTTAGC CCTCCCCTCT
  CCATATTAGT GTGGATTGTG AACAAAATAT ACACTAATGA GCTCAGTGCT CAGTAATAAG
  GTAGTTGGTG TTTTAGTCAT TTTATTGTAT AAAATCCAAA ACTCAGGTCC CTTGAAAGGG
  Y
  AGCACAGAGA CAGAAAGAGG GAGGGAGAGA TAGACAGACA GAAAGAAGCA AATGTTTAAA
  GTATCAGTCC TAAACAAACA AACAAACAAA CAAAAAACAA AAAATGAAAC AAAACAAAAC
  CAGGGACAGC CTGAGCATTG ATTAAAAAGT CGAGTGTTCT CTGCAGGAAC AGTTCTGACT
  GCTTTCCTAG GAGCCCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48216987	NES11779503	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32823436					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48216987	NES11779503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400755 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	within coordinates
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1861 bp downstream
Saa2	serum amyloid A 2	502 bp upstream
Tssr66700	transcription start site region 66700	501 bp upstream
Tssr66701	transcription start site region 66701	1022 bp upstream