rs32822886 SNP Detail

Summary

• ID
  rs32822886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152575127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTGACA TGATGTTATC
  CAGCGCTTGA AAGGTCTGCC AGACCAGTGT GTCAGCGACA GTGGAGTCCA TGTTGTAAAT
  CTCGTCATGA TTCTGCGTGA CCCCACGAGA CGTGCCACGA GGGCCGTCTC AGCTTGGGCA
  GTGTGTGGCC TGGCGCCTTT GGCAGGGCGG GTAAAGGAGG TTTGCCCTCT GTCTCTTGGC
  R
  GTGTTACAGC AGGTGGGGGA TGGTGCAGCC CCCTGCCGCC CTTGGCAGCA GCTCTGGAGG
  CACGAGTGGG CTGTTTTGAT TTTCTCTTTC TCCCATGTGT AGGGGCCCGG GGAAACCTTG
  TGTCGTGACA AGTGTTGGTG ATAAATGGTG CTGGTGGCTA TGACGACACA CCTTCTGTGG
  GGAGGGTGGC TGAGGTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45698877	mCV25088395	ABI	CRAMUS_MOUSE	f	SNP	A		G	G
ss148082855	ENSMUSSNP5741683	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32822886					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152575127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605890	regulatory region 605890			652 bp proximal
Rr605891	regulatory region 605891			761 bp proximal