rs32818647 SNP Detail

Summary

• ID
  rs32818647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107223762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAGTAGG CTTGGCTCAC TAGCTATAAG CCTCATAGAG
  CTCCCTATCT CTGCCTGCTC AACACCTGCC CACCTGCCCA GCACCTGCCC AGCACCTGCC
  Y
  AGCACCTGCC TAGCACCTGC CCAGCACCTG CCTAGCACCT GCCTAGCACC TGCCCAGCAC
  CTGCCTAGCA CCTGCCCAGC ACCTGCCTAG CACCTGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45698924	mCV23105723	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147178135	ENSMUSSNP6605870	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs32818647					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107223762 () rs orientation: forward

Symbol	Name	Function Class
Ndc1	NDC1 transmembrane nucleoporin	1482 bp upstream
Rr367664	regulatory region 367664	1022 bp upstream
Rr596979	regulatory region 596979	734 bp proximal
Rr596980	regulatory region 596980	803 bp proximal
Rr596981	regulatory region 596981	1230 bp proximal
Rr596982	regulatory region 596982	1275 bp proximal
Rr596983	regulatory region 596983	1719 bp proximal
Tssr38245	transcription start site region 38245	1164 bp upstream
Tssr38246	transcription start site region 38246	1192 bp upstream
Tssr38247	transcription start site region 38247	1439 bp upstream
Tssr38248	transcription start site region 38248	1474 bp upstream
Tssr38249	transcription start site region 38249	1496 bp upstream
Tssr38250	transcription start site region 38250	1510 bp upstream
Tssr38251	transcription start site region 38251	1756 bp upstream