rs32818186 SNP Detail

Summary

• ID
  rs32818186
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151848385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAAGGGT GGATTGCCCC
  AGAGCAGCAA AAGGAGGGAA CAGCGACACC CACAGCCGCC CTAGGCTGGA GTTCACACCC
  CACACTGTCC AAGGTGACCC TCAGCTGTGT TTTTGGTCTT CTCAACTCTC CACCCCAAAA
  ATATAAAATG AAGGAGGGCT GTACTTCATC AAACCAGAAG CCTGCAACAC AAATCCCTCT
  K
  CTGAGGAAAG CAAGCTTGTC CGAGGCCAGC TGTTGAGAGT GAGGTGAGCT CTGACTGGCT
  GTGTACCCTG AGCACCGCTG GTGCATGCAG CCACCAGGCC TGTGCTTCAG GGCTACAGAG
  TGCTAGGGGC TCCCTCCGAG TCATACAGGC GTGAAGAGAC AAGTAGATGT AGGCAGCCTC
  CAGGGGTAGG ACAGAGTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46732911	NES10994803	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32818186					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46732911	NES10994803	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151848385 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Rr605638	regulatory region 605638			82 bp proximal
Rr605639	regulatory region 605639			1580 bp proximal