rs32816626 SNP Detail

Summary

• ID
  rs32816626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151848011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTCCCA GGAGTATTTT
  GAATTAATTC AAATATAACC TATCTAAACA CTACAGAGTG TAAACCACTT TGTTTGCCCT
  TTCACCTCAA TTATTAAAAG TTCTTAAAAC TATCCTGTTC ACACCAACCA CTTCAGATGA
  CCACAGCAGA CAGTTGTCTC TCAGAGGCCA AGAAACCCTT GTTCCTCCAC TGCAGAGCAC
  Y
  GGATGTAACA CGGCCAGGGT GCTTGTGTTA TTATGTCCTT CACCTGTTAT CATGGCATGA
  TGCCTTTTGT TACATGATAA AATTGATCAC GCGGCTCCAG CAGTGGGCCC GCAGTGTTCG
  TGTGGTTCTG AAGACAGTGG GATACCAAGC TCACCTGTCA GTAGAAAGTT CTGGTGAAAG
  GGTGGATTGC CCCAGAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46732890	NES10994796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32816626					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46732890	NES10994796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151848011 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Rr605638	regulatory region 605638			456 bp proximal
Rr605639	regulatory region 605639			1954 bp proximal