rs32816508 SNP Detail

Summary

• ID
  rs32816508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151850880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGTGGC CCCAGAAGAT
  GCAAGTGAGA GATGCAGGTG CTGTCCCCAG GGATGCCAGG GGATGGCAAT GGCAGGGTTA
  GGCTCCCACG TACTTCCTTA CTCAGGTGCA GCAAGCACAG AGCAGGTCAG GGGCAGGGTT
  CCCTGGAAAA GCTCATCCCC ATTCACCTGA GAACTCCGGG TCCTCAGCAT GGGGACAGTG
  R
  CTTTAGCAGC ATAATGTGTA ATATAAATAA AGGAGATAAG GCTAAGAACA AGGAGGCAGA
  TACCATCACA GGTAAATGGA TATGTGTTCC TCTAGATGGG AAGGCAGCCC AGAGAGAAGG
  CCAAGAGGGA AGGCTGGCCA GGAAACAGGA GGGACTGAGG AATGGAGCAG GAGGACAGTG
  CCCTGAATGA AAGGGACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46732989	NES10994846	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32816508					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46732989	NES10994846	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151850880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Rr605639	regulatory region 605639			686 bp distal
Rr605640	regulatory region 605640			1009 bp proximal
Rr605641	regulatory region 605641			1430 bp proximal