rs32816505 SNP Detail

Summary

• ID
  rs32816505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151850783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGGGCA TGTCCCTTGG
  GGACATCTCG TCTGTGTGAG ACTCAAACCC AGTGGTGAAG TGGTGGCACC ACCAGCCTCT
  ATGATAGTAG GTACAAGGCT GTGTGGCCCC AGAAGATGCA AGTGAGAGAT GCAGGTGCTG
  TCCCCAGGGA TGCCAGGGGA TGGCAATGGC AGGGTTAGGC TCCCACGTAC TTCCTTACTC
  R
  GGTGCAGCAA GCACAGAGCA GGTCAGGGGC AGGGTTCCCT GGAAAAGCTC ATCCCCATTC
  ACCTGAGAAC TCCGGGTCCT CAGCATGGGG ACAGTGGCTT TAGCAGCATA ATGTGTAATA
  TAAATAAAGG AGATAAGGCT AAGAACAAGG AGGCAGATAC CATCACAGGT AAATGGATAT
  GTGTTCCTCT AGATGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45710620	mCV24231410	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss46732986	NES10994844	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	G	A	A	A	G
ss148077054	ENSMUSSNP7122970	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32816505					SNP	G	G	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46732986	NES10994844	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151850783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Rr605638	regulatory region 605638			1967 bp distal
Rr605639	regulatory region 605639			589 bp distal
Rr605640	regulatory region 605640			1106 bp proximal
Rr605641	regulatory region 605641			1527 bp proximal