rs32813058 SNP Detail

Summary

• ID
  rs32813058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116460239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGGAAATAT CAGTCACACA ATTTGATGAG GAAGCGCCAT CTGTTGGTTT TCTACTGGCA
  ATCTAGCAAA AATAAGCCTT TGTTAATTAT CAGTTTACAA AAACCTGTAG ACTCATAGTA
  AGCCTAATGA CAAATAAAAT ACTCACCATG GATACTGAGG CACCAGCTCC ACTAGGAGTG
  AAACCGGAAG TAGAGCTCTC CACCTGTGTG AGACACAGAC AATTTTTGTT GGTTTTTAGG
  GGGTTTTTGT TGTTGTTTTT TTGGGTTTTT TTTTTTTTAG ATAGGGTTTC TCTGTGTAGC
  Y
  CCAGCTGTGC TGAAACTCAC TCTGTAGATC ATGCTGGCCA CAAACTCAGA AATCCTCCTG
  CCTCTGCCTA CCAAGTGCTG GGATTAAAGG TGTGCACCAC CACTGCCCAG CTTGATACAT
  GGACAGGTAA ATTACAGAAT AGAACCCCAG CCACTCAGGC TCAAGTTGCC TACCTCGAAT
  AACAGCTGAT TAAAAGGTAA AATTCCTTTT GCCTACAGCA AAGAGTTCAA CGCAGACACC
  TACATTCAGA GTAGGCAAGA AACTAAACCA TTCTCATGTC CTATTTACAA TACAGATTAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45697453	mCV23197843	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss147279801	ENSMUSSNP1743346	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321277571	CHEV_4_116275647	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32813058					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116460239 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nasp	nuclear autoantigenic sperm protein (histone-binding)			Intron
				Noncoding-Transcript-Variant
Rr597935	regulatory region 597935			249 bp distal