rs32808061 SNP Detail

Summary

• ID
  rs32808061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143027664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG CTAGCTAAAC CCAGTGTCCA
  Y
  GGAAAGCTTG ATCACAGGAA TGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45696733	mCV25432296	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147779142	ENSMUSSNP5216169	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321403832	CHEV_4_142890997	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32808061					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143027664 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	1530 bp upstream
Rr604190	regulatory region 604190	1642 bp distal
Rr604191	regulatory region 604191	1040 bp distal
Rr604192	regulatory region 604192	22 bp proximal
Rr604193	regulatory region 604193	1474 bp proximal
Tssr44447	transcription start site region 44447	1804 bp upstream
Tssr44448	transcription start site region 44448	1612 bp upstream
Tssr44449	transcription start site region 44449	1583 bp upstream