rs32801300 SNP Detail

Summary

• ID
  rs32801300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71849816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG GGGAAAAGTA GTTTTGGGAA
  R
  CTTCAACTGT ATCTTTTCGG CTCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46193450	mCV24425486	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss145146184	ENSMUSSNP4779360	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss322703837	CHEV_8_73921071	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32801300					SNP	G	G	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71849816 () rs orientation: forward

Symbol	Name	Function Class
2310041K03Rik	RIKEN cDNA 2310041K03 gene	397 bp upstream
Babam1	BRISC and BRCA1 A complex member 1	Intron
Cpgi20525	CpG island 20525	23 bp distal
Rr400925	regulatory region 400925	244 bp downstream
Rr665043	regulatory region 665043	1398 bp distal
Rr665044	regulatory region 665044	1143 bp distal
Rr665045	regulatory region 665045	301 bp distal
Tssr77853	transcription start site region 77853	281 bp downstream
Tssr81705	transcription start site region 81705	1351 bp upstream
Tssr81706	transcription start site region 81706	1332 bp upstream
Ushbp1	USH1 protein network component harmonin binding protein 1	1370 bp upstream