rs32799122 SNP Detail

Summary

• ID
  rs32799122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85967079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG TGCTATCTCT CCAACCTCTC
  Y
  CCAAGGCTTC TTTACACAGC TTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45196195	mCV24373493	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss144872181	ENSMUSSNP2050821	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss319827692	CHEV_1_87935932	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32799122					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85967079 () rs orientation: forward

Symbol	Name	Function Class
Rr414457	regulatory region 414457	331 bp distal
Rr414458	regulatory region 414458	751 bp proximal
Tssr140	transcription start site region 140	302 bp upstream
Tssr7715	transcription start site region 7715	281 bp upstream
Tssr7716	transcription start site region 7716	306 bp upstream