rs32794223 SNP Detail

Summary

• ID
  rs32794223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151850933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGGGGA TGGCAATGGC
  AGGGTTAGGC TCCCACGTAC TTCCTTACTC AGGTGCAGCA AGCACAGAGC AGGTCAGGGG
  CAGGGTTCCC TGGAAAAGCT CATCCCCATT CACCTGAGAA CTCCGGGTCC TCAGCATGGG
  GACAGTGGCT TTAGCAGCAT AATGTGTAAT ATAAATAAAG GAGATAAGGC TAAGAACAAG
  R
  AGGCAGATAC CATCACAGGT AAATGGATAT GTGTTCCTCT AGATGGGAAG GCAGCCCAGA
  GAGAAGGCCA AGAGGGAAGG CTGGCCAGGA AACAGGAGGG ACTGAGGAAT GGAGCAGGAG
  GACAGTGCCC TGAATGAAAG GGACAATGGA CATCAGAAAA AAAAAATGTT CAGGCACTCC
  AGAACACAGA GGCAGAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45695068	mCV24231420	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss46732992	NES10994852	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	A
ss148077058	ENSMUSSNP2325059	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32794223					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46732992	NES10994852	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151850933 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Rr605639	regulatory region 605639			739 bp distal
Rr605640	regulatory region 605640			956 bp proximal
Rr605641	regulatory region 605641			1377 bp proximal