rs32786724 SNP Detail

Summary

• ID
  rs32786724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119690920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCACTGTC AGGACTGGCC
  TTTCTGCACG AATCAATTGA GACTGGTTGT CCTTTCATGA AGGGATCAAG TTCCCCAGTG
  TTTGCCTGGT TAATTACTTC CTTGCTTGTG CTGATAGACC CGACCATACT GAAACCTGTG
  GGTTCTCTTG TTTGCCTCTG CTTGCCCTAA CAAGGTTAGC TTCCGTCCTG CAAAATGGCT
  Y
  GCAAGGGGGC TCTGACAGCA TAGTTTTCAG ATTGCTTGAT GAAGCCGGGC TATCTGTTAC
  AGTTAGACAA CACTTCATGA TTTTTTTCCA AGGAGACATT CTTGGGAACT TCAGGAATCA
  ACCTGTGGAA AGCCAGCGGA GCCTTTGCTG TTGCTTTGGA GCAGAGGACA GTTCTAGCCT
  CAGTAGCCCT GGCTGTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45693925	mCV25416464	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147336469	ENSMUSSNP944422	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs32786724					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119690920 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			within coordinates
Rr598660	regulatory region 598660			889 bp proximal