rs32785725 SNP Detail

Summary

• ID
  rs32785725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129943404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT TTGGGCACTC TGAAGCCCAC
  Y
  CCCCATGTCT CTGGTTGTCA GGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45694253	mCV22593138	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147458260	ENSMUSSNP2347559	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321316734	CHEV_4_129726855	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs32785725					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129943404 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm12963	predicted gene 12963			1189 bp upstream
Rr600421	regulatory region 600421			1863 bp distal
Rr600422	regulatory region 600422			1761 bp distal
Rr600423	regulatory region 600423			1027 bp distal
Rr600424	regulatory region 600424			482 bp proximal
Tssr39218	transcription start site region 39218			1710 bp downstream
Tssr39219	transcription start site region 39219			1682 bp downstream
Tssr39220	transcription start site region 39220			1099 bp upstream
Tssr39221	transcription start site region 39221			1130 bp upstream