rs32776499 SNP Detail

Summary

• ID
  rs32776499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108000022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC TATAAACTGG CCCTGGGGGA
  Y
  TAGAGAAATG GCTCAGCAGT TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45692649	mCV24671145	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss147185442	ENSMUSSNP3010447	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321252276	CHEV_4_107815430	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32776499					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108000022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr376981	regulatory region 376981			1815 bp upstream
Rr597136	regulatory region 597136			537 bp proximal
Scp2	sterol carrier protein 2, liver			Intron
				Noncoding-Transcript-Variant