rs32775119 SNP Detail

Summary

• ID
  rs32775119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100688992 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTTATTACAT GTTGGAGCAT ATTCTGGGTA TATGCTCAGG AGTGATATAG ATGGGTCCTC
  AAGGTAGTAC TATGTCCAGT TTTCTGAGAA ACTGCCAGAC TGATTTCAGG CAGGGTTGTA
  CCAGTTTGCA ATCCCAACAG CAATGGAGAA GTGTTCCTCT TTCTCCACAT CGTCGCCAGC
  ATCTGCTGGC ACCTGAGTTT TTAATCTTAG ACATTCTAAT TGATGTGAGG TGGAATCTCA
  GGGTTGGTTA TTTTGATTTT CATTTCCTTG AGGACTAAAG ATGTTGAACA TTTCTTTAGG
  Y
  GTTTCTCAGC CATTCGAGTT TCCTCAGTTG AGAATTTTCT GTTTAGCTGT GTACCCATTT
  TTTAATAGGG TTATTTGGTT CTCTGGAGTC TAACTTCTTG AGTTCTTTGT ATATATTGAA
  TATTAGCCCT CTATTGGATA TATGATTGGT AAAGATATTT TCCCAGTCTG CTGGTTAGCA
  TTTGTCCTAT TAACAGTGTC CTTTGCCTTA CAGAAGCTTT GCAATTTTGT GAGGTCCCAT
  TTTTCCATTC TTGATCTTAT AGCATAAACC ATTGGTGTTC TGTTCAGAAA CTTTTCCTCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45692737	mCV23989279	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32775119					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100688992 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1913 bp proximal