rs32773226 SNP Detail

Summary

• ID
  rs32773226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43958693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT CCTGCATAGA TAAGGGACAG
  R
  TGGGCAATAG ATCTTCTTGC CTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45691482	mCV24934004	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss146245017	ENSMUSSNP6844736	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss321099579	CHEV_4_43971565	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32773226					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43958693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14202	CpG island 14202	263 bp distal
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr367610	regulatory region 367610	1306 bp downstream
Rr398233	regulatory region 398233	837 bp upstream
Rr591111	regulatory region 591111	991 bp distal
Rr591112	regulatory region 591112	1317 bp distal
Rr591113	regulatory region 591113	181 bp distal
Rr591114	regulatory region 591114	within coordinates
Rr591115	regulatory region 591115	822 bp proximal
Rr591116	regulatory region 591116	1105 bp proximal
Tssr37004	transcription start site region 37004	1197 bp downstream
Tssr37005	transcription start site region 37005	1166 bp downstream
Tssr37006	transcription start site region 37006	958 bp downstream