rs32772909 SNP Detail

Summary

• ID
  rs32772909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135001128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTCACC TTTGGGAAAT
  TTGCCTTCTG GTTTTCCTTA ATCTGCTCAT TCTGTGGTAC CTCCCAGGCT AGGGTGATGA
  GTGAGTTGAT TAGAAAGGCT AAATTGGGGG ATGGAAGCGG GGTGTCATGG TTATCTCACA
  TCCTCTGTGC CTAGTGTGGA TCAGAGTGCT TCAACAAATT GGAATGATGT GTAAAAATGC
  R
  GTGCAACCTG CAACTACTTT ATCCTCACTC AACCCCATCT CCAAGTTGCT AGATTCTGTG
  AGAAGGATGC TGTGCCCCAG CAATTAGATC CATCAATGCT CCGGAGTAAG GCTGTTTTAA
  GTTCACAGTT TGGCAGTGGC CTTAAACACC CTAAACCTCG GCCTGATTTG GTGACATATA
  CGTGGCTCTC AGGTGATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45692144	mCV25366074	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss147543319	ENSMUSSNP2577357	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32772909					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135001128 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	1057 bp upstream
Rr398589	regulatory region 398589	626 bp downstream
Rr601975	regulatory region 601975	1014 bp distal
Rr601978	regulatory region 601978	1347 bp distal
Rr601979	regulatory region 601979	1004 bp distal
Rr601980	regulatory region 601980	513 bp distal
Rr601981	regulatory region 601981	688 bp distal
Rr601982	regulatory region 601982	727 bp proximal
Tssr39607	transcription start site region 39607	1635 bp downstream
Tssr43973	transcription start site region 43973	1100 bp upstream
Tssr43974	transcription start site region 43974	1070 bp upstream
Tssr43975	transcription start site region 43975	1044 bp upstream
Tssr43976	transcription start site region 43976	1025 bp upstream
Tssr43977	transcription start site region 43977	998 bp upstream