rs32772078 SNP Detail

Summary

• ID
  rs32772078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152631673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGAAAT GATGGCCGTG
  AGCGGCGATG TGGCTGGCTT CGGCAGCGTC AAGCCCATCG GAGTCCACAC GGTAGTGAAG
  GGCCGCCTGC ACCTGACCTT GGCCAACGTG GGTAAGAGCC TGGCAGCTTC ACATGGCCCG
  CCTGGTTTTG TGCCATTTAT CTAGCACCCG TCTCCCCAGC CGGAGCATGA GGGGAGCACC
  R
  CCGTGGACAC CCCACACTTT GTAGGAAACC AACACGGTTA GGGTGAGCAT GGTCACCCTG
  ACCTCAGCCA CTGTCCTGAC AGGAGCTTGG AATCACCCTT CTCCTCAGGC CTGTCCACGA
  ATCTTCCCGT GACCACCCTC AAACAGGGTG ACTACGCGCC AGAAGGGATC TCATTTGGAG
  TCCCTGCCCC AGCGCTGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45691870	mCV23363086	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148083529	ENSMUSSNP6016284	ENSEMBL	ENSEMBL_Sanger	f	SNP			A	A
ss321435167	CHEV_4_151921325	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32772078					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152631673 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605903	regulatory region 605903			430 bp distal
Rr605904	regulatory region 605904			515 bp distal
Rr605905	regulatory region 605905			571 bp proximal