rs32770875 SNP Detail

Summary

• ID
  rs32770875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149238854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GAGTGCTTTG ACCTGGGTTA
  Y
  GGGGAAGGGC CACATAGCTC TGTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45692216	mCV22641315	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss148029176	ENSMUSSNP1739067	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss321425103	CHEV_4_148528506	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32770875					SNP	T	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149238854 () rs orientation: forward

Symbol	Name	Function Class
Pgd	phosphogluconate dehydrogenase	Intron
Rr604846	regulatory region 604846	634 bp proximal
Rr604847	regulatory region 604847	1026 bp proximal
Rr604848	regulatory region 604848	1348 bp proximal
Tssr44628	transcription start site region 44628	413 bp upstream
Tssr44629	transcription start site region 44629	166 bp upstream