rs32768477 SNP Detail

Summary

• ID
  rs32768477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGC ACAGGCAACC TTGGATTATT
  K
  TATGTGTATA CAAGTACGAA TGCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45691347	mCV24230126	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss147475428	ENSMUSSNP164683	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321334504	CHEV_4_132120674	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32768477					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292070 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	682 bp distal
Rr601016	regulatory region 601016	462 bp distal
Rr601017	regulatory region 601017	634 bp distal
Rr601018	regulatory region 601018	479 bp distal
Rr601019	regulatory region 601019	732 bp proximal
Tssr39381	transcription start site region 39381	1278 bp downstream
Tssr39382	transcription start site region 39382	1249 bp downstream
Tssr39383	transcription start site region 39383	1166 bp downstream
Tssr39384	transcription start site region 39384	1131 bp downstream
Tssr39385	transcription start site region 39385	1022 bp downstream
Tssr39386	transcription start site region 39386	683 bp downstream
Tssr39387	transcription start site region 39387	666 bp downstream
Tssr39388	transcription start site region 39388	549 bp downstream
Tssr39389	transcription start site region 39389	601 bp upstream