rs32766590 SNP Detail

Summary

• ID
  rs32766590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117773900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG AGGAAGTCCA TCCATCACAA
  Y
  GAGTCAGCAA ATCGTTGTCC AAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45691794	mCV25045924	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147295308	ENSMUSSNP2549023	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321280715	CHEV_4_117589308	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32766590					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117773900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14674	CpG island 14674	1190 bp distal
Ipo13	importin 13	1704 bp upstream
Rr398419	regulatory region 398419	1289 bp downstream
Rr598257	regulatory region 598257	1715 bp distal
Rr598258	regulatory region 598258	1736 bp distal
Rr598259	regulatory region 598259	1214 bp distal
Rr598260	regulatory region 598260	1670 bp proximal
Tssr43010	transcription start site region 43010	1991 bp upstream
Tssr43011	transcription start site region 43011	1746 bp upstream
Tssr43012	transcription start site region 43012	1685 bp upstream
Tssr43013	transcription start site region 43013	1649 bp upstream
Tssr43014	transcription start site region 43014	1528 bp upstream
Tssr43015	transcription start site region 43015	1505 bp upstream