rs32758906 SNP Detail

Summary

• ID
  rs32758906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAGTAC ATACAACCTG
  TCACCTCATA GGTACTTCTT AGTTATTGCT GCTTTCTCTG TGACAGGTAA CTGTGCTATG
  CTTCCAACAG ATAACAAGGC TGGTCTCCCA CAACTTAAGT TGTCGGAGTC AGTCAGCTAG
  GAAACAGAAT CACACTTCGG AATCAAGCCT GTCTGCCCCT CAAACTCCTG CTTTCCCTCC
  Y
  ATACTGCTTT TCAACACAGA GCAGTGGAAA AGACTGTAGA AGCCAAATGA CCCTGCCCAA
  CCTATATCAC TTATTGTACA ACTGTGGAAG TGTTACTGGA GTCGGCTTCT GACACACACA
  TGAGGTCTGA GTTAGAGTTG CTAGATCCAC TGACATCTAG CCTCAGAGCC TTTGAAATCA
  CGATTTATGC AGATACAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45190688	mCV24419633	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146157106	ENSMUSSNP5272861	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320117256	CHEV_1_173145973	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs32758906					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043411 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nr1i3	nuclear receptor subfamily 1, group I, member 3			Intron
				Noncoding-Transcript-Variant
Rr423243	regulatory region 423243			1811 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like			168 bp downstream
Tssr9983	transcription start site region 9983			1835 bp downstream
Tssr9984	transcription start site region 9984			1797 bp downstream