rs32747774 SNP Detail

Summary

• ID
  rs32747774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135675415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTATGG CACAAGATGG
  CACTTTTATT TCATTTGGTT TGGTTTGGTT GTTCCGTTTT TGGTTTGGTT TGGTTTTTAA
  AGGCAGGCTT ACTCATCCTT GGCTGTCTGG ACTCAATTAG TAGACCAGGC TGGCTTTGAA
  CTCACAGAGA TCTACTTGCC TCTGCCTCCC AAGTCCTGGG ATTATTAAAG GGATTAAAGG
  Y
  ATGCACCACC AGGTGAGCTA TCTGACTTGG GTCTGAGAAC CCTACTCAGA TCTTCTGTGG
  AGCCATCTCT TCGACCCTGG GCTTTTTAAA AATTTCTCAC ATATCTCAGG CTGACCTCAA
  GTTTGCTGTG TAGCAACTTG AAAGCAGCCA TGAGCTTCTG ATTCCCCCTG CTTCCATCTC
  CCAAGCGCTG GGCCTCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45688472	mCV22566129	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32747774					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135675415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15085	CpG island 15085			812 bp distal
Gm69275	predicted gene, 69275			1727 bp upstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr602211	regulatory region 602211			1738 bp distal
Rr602212	regulatory region 602212			1646 bp distal
Rr602213	regulatory region 602213			669 bp distal
Rr602214	regulatory region 602214			135 bp proximal
Rr602215	regulatory region 602215			692 bp proximal
Tssr39660	transcription start site region 39660			1609 bp downstream
Tssr39661	transcription start site region 39661			312 bp upstream
Tssr44007	transcription start site region 44007			1722 bp upstream