rs32747188 SNP Detail

Summary

• ID
  rs32747188
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141231532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACCCAGC AAAAACGTAG
  GCTATTTCAT TTCAAACGAA ATCCCAACTG GGTACACCTG AGGCAGCCTG TGTCAATGCC
  TAAGCCAATA TACTTTGAGG TTTTGTCCTT CCCAAATGTA ACTTTACGCT AACTCTCCGT
  CCTGTCCAGG ACACGAGAGA AGCCCGCTCG TGCCTACTTC GGAACATTCT TTGGAAGTCT
  M
  CCCGGGCCCA AGAGGTCTGA AAGGCACTCA GCTACCCAGA GGCAGCTTAG CTTTACAACT
  TGGGGACACT GGCTTATTAT TGAAAAACCT CGGCCTAAAG CTGTTCCCTC TAAATGCGGC
  CATTTCTTTA GAATTTTCAC CAAAGACACA AAGCCATAAT GCACAATGGC TGTGGCACTG
  TGACAGGGCA CATTCAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45689102	mCV22902693	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss147739611	ENSMUSSNP3636579	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
ss321387720	CHEV_4_141060136	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32747188					SNP	C	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141231532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			338 bp proximal
Rr603781	regulatory region 603781			1711 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant