rs32745831 SNP Detail

Summary

• ID
  rs32745831
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152412098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATCCGAG GCTTCATCCA
  TGTTTTCTGT ATACTCCTAG AAAAAGCTTG TGGCGAAGGG GGGCAAAAAA AAGAAGCAGG
  TTTTGAAGTT CACCCTGGAC TGCACTCACC CTGTAGAAGA TGGAATCATG GATGCTGCCA
  ATTTTGTAAG TGACATTCTG CTGGGCCTGT GCAGTGGGGG GGGAGGGGGG TCCTGTCCCG
  S
  GTTCGTGGCT TGTTGGGCAG TCCCCACTTT TTCATTTAAC CAGAGCCAGG GCAGATTAAG
  TATTTGTTGC TGCATCTCTT GAGATAGAAG TATAATGGCA GGCTGTGACA TACAGGTGAC
  AGAGCTAGCT GTTCTGTCTT GATGACCTTA ACCCTGAATC AGGCGACCAC CACGGGTCTG
  TATGGGCCCA CTCTCTGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45689194	mCV23462474	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss148080860	ENSMUSSNP3520189	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			C
ss321434199	CHEV_4_151701750	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32745831					SNP	G	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152412098 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15411	CpG island 15411			1050 bp distal
Rpl22	ribosomal protein L22			Intron
				Noncoding-Transcript-Variant
Rr398901	regulatory region 398901			1795 bp downstream
Rr605841	regulatory region 605841			1762 bp distal
Rr605842	regulatory region 605842			936 bp distal
Rr605843	regulatory region 605843			1336 bp distal
Rr605844	regulatory region 605844			1115 bp proximal
Rr605845	regulatory region 605845			1229 bp proximal
Tssr40547	transcription start site region 40547			1765 bp downstream