rs32744279 SNP Detail

Summary

• ID
  rs32744279
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147893410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACCCCCTT GACTTGTGGT TCCTTCCTTT AAATACCCCC TTACCCAGCT ACTCTGCATA
  CCACAGTCCT CTAGCATTGC ATGGTTTATG ACTGTGGGCC TGAGAGCTCT CTTGAAATAA
  AAGTCCTCTT GCAATTTGCA TCAAAACCGT TTCTCCAGTA ATTTGGGGTG TTGCCTCTCC
  TGAGTCAGAA CGTGGGAGAG TCCTCACCTT TTGGGTCTTT CAACAGTACT TTATAACGAA
  TATTTTCGAA TTCAATCAAA TCTGCACTGA TCCCCATATG ACAAATACCT ACAAAGCTCT
  S
  TAGGGATGCC TATCCAGTTC CCTGGAGAAA GGGAAACGAA ATGGCAAATG GAGGAACAAG
  GGAGTTAAGA AAGCATGAAT GAATTTGAAT TTGAGGAGCT TTATTATGGC TTTTGCAAAG
  ACAACCATCC CAATACACAA ACTCCAGAGA CGGCCAAGGA TCTACGGGGT TATTTAAAAA
  AAAAAAAATC TGGCACCCAT AAAATTAATT AAAACATCAC CATGAACCCA ATTCACAGGA
  TCTCAAACTT CCTGATAATG GTAAGATACC ACAACAGAAT TGGGAGAGTG GCGGCAGAAA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45688792	mCV24211623	ABI	CRAMUS_MOUSE	f	SNP	G	G		C
ss147982688	ENSMUSSNP6286334	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32744279					SNP	G	?	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147893410 () rs orientation: forward

Symbol	Name	Function Class
Gm20707	predicted gene 20707	within coordinates
Rr377386	regulatory region 377386	within coordinates
Rr604501	regulatory region 604501	141 bp distal
Rr604502	regulatory region 604502	219 bp proximal
Rr604503	regulatory region 604503	825 bp proximal
Tssr44548	transcription start site region 44548	849 bp downstream
Zfp984	zinc finger protein 984	Intron