rs32740597 SNP Detail

Summary

• ID
  rs32740597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135683328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTCCCA AGCTCTACTC
  CTGGGAACCT TTCTCCAAGT GCATGTGGTC AGATGAGCCG GGCTTTCTCT CAGACATACA
  GTGTTGACTG ACCAAGTGTA GGTCAAGCCA GCCTGGAACT CACAGACATC CAGCTGACCC
  TGCCTTAAGT CTGGAATGTT GTGTGCCACC ATGCCCAACC CTGCTGGGAA GCCAGGCCCG
  R
  CAGCATGGGA ACTGGTAGCC TGTGGCTTTA AACGTGTCTC AAAACAAACA AGCACAGACA
  GACAAACAGC AGAATGCCGT GCTGGGCATG AAGCCCAGCC CCGATGAGGT TTTGTAACAC
  GTGAGTCTGC TACCACTGAG CTATGTCCAC GCTGAGTGAT CGCTCTCACT GTGATTTTCA
  GGGCTCTGTG TGCGGCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45687970	mCV22566117	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147554708	ENSMUSSNP6575461	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32740597					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135683328 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			1413 bp downstream
Rr602218	regulatory region 602218			1310 bp distal
Rr602219	regulatory region 602219			1557 bp distal
Rr602220	regulatory region 602220			1847 bp proximal