rs32740569 SNP Detail

Summary

• ID
  rs32740569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135000861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTCGTC CTGTGTCCCG
  GGCTCTGAAT TAGGCCAAAA CGGTGGGACA GCGTCCCGCT CCAGCACAAC CCCAGTGCTT
  GAGGCAGCGC CTGACTCTGA AAACGTTATC CGTGCTGTTT TGCCCCACCT GGACCGATTC
  CTGTCTTCCG TTCACCTGGA GAAGTTTAAT GAGTCACCTG AGTGCCACTC AGCGCGCAGG
  R
  GCGAGTACTT TACACCCTGA GGACAGGGGC CTGAGACACG CGGTCTACTG CGGAATTGCC
  GTCAGTGAAT GTCACCTTTG GGAAATTTGC CTTCTGGTTT TCCTTAATCT GCTCATTCTG
  TGGTACCTCC CAGGCTAGGG TGATGAGTGA GTTGATTAGA AAGGCTAAAT TGGGGGATGG
  AAGCGGGGTG TCATGGTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45688047	mCV25366086	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss147543309	ENSMUSSNP1489898	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32740569					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135000861 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	790 bp upstream
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	359 bp downstream
Rr601975	regulatory region 601975	747 bp distal
Rr601976	regulatory region 601976	1872 bp distal
Rr601977	regulatory region 601977	1826 bp distal
Rr601978	regulatory region 601978	1080 bp distal
Rr601979	regulatory region 601979	737 bp distal
Rr601980	regulatory region 601980	246 bp distal
Rr601981	regulatory region 601981	421 bp distal
Rr601982	regulatory region 601982	994 bp proximal
Tssr39607	transcription start site region 39607	1368 bp downstream
Tssr43973	transcription start site region 43973	833 bp upstream
Tssr43974	transcription start site region 43974	803 bp upstream
Tssr43975	transcription start site region 43975	777 bp upstream
Tssr43976	transcription start site region 43976	758 bp upstream
Tssr43977	transcription start site region 43977	731 bp upstream