rs32738657 SNP Detail

Summary

• ID
  rs32738657
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43958232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGCAAAGTT CCGAGGAGCG GCTGTTTCTG GTTCAACCAG GGGGTGGGGT GGGTGGCGCG
  GAGGTAGCGG TAAGAACACC GGCTAGGAGA GAAAGAATGA GGGGAATGAG ATGGAGGGTC
  CCTTTGGCTG CGAGCCAGGG ATTGCGTCAG CGAGGGTTTC TAAGCGCTGA TGGGGATAGC
  TGAGCCTGCC TAGGCGTGGC TATGCTTTGT CCAGAGGAAG ACAAAGTTAC AGTGGGAAAA
  AGACACCAAA CCGTGGCAGC ATCCCAGGCT GCGAAGCAAC TAGTCTGGTT CCACCCAACT
  M
  AGAGCTCTGA GACTCCTTTT CGTCTCCTTC TCGCTCACCT CCTGAGGCCC CTCCGTGTCA
  GGCTGGGTGC TGTGCAGAGC TACTTCCCCT GTGATCTCTG CCCTGCTGCC GCCCACCCTC
  ACTCCTGTGG CTGTAAAGTT TACGTTTCTG AAAAGCCGTT TTCCTGTCGC TCCTTGTTTT
  TGTCACCTTC CACCCCATTG TCGGCTCTCT GGCCACTGAC AGCACCCCCT CTGCCACACA
  GCTGCGCTGG CTGGCAGGCA GGCACTCAGG TCCTTTCCCC TCCGTGTCCC GGTCCAGTCT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45687280	mCV24934017	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs32738657					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43958232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14202	CpG island 14202	within coordinates
Glipr2	GLI pathogenesis-related 2	within coordinates
Gm30377	predicted gene, 30377	within coordinates
Rr367610	regulatory region 367610	845 bp downstream
Rr398233	regulatory region 398233	1298 bp upstream
Rr591111	regulatory region 591111	530 bp distal
Rr591112	regulatory region 591112	856 bp distal
Rr591113	regulatory region 591113	within coordinates
Rr591114	regulatory region 591114	281 bp proximal
Rr591115	regulatory region 591115	1283 bp proximal
Rr591116	regulatory region 591116	1566 bp proximal
Tssr37004	transcription start site region 37004	736 bp downstream
Tssr37005	transcription start site region 37005	705 bp downstream
Tssr37006	transcription start site region 37006	497 bp downstream